Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTKDAVAVVTGGASGLGLATTKRLLDAGAQVVVVDLRGDDVVG-------GLGDRARFAQADVTDEAAVSNALELAD-SLGPVRVVVNCAGTGNAIRVLSRDGVFPLAAFRKIVDINLVGTFNVLRLGAERIAKTEPIGEERGVIINTASVAAFDGQIGQAAYSASKGGVVGMTLPIARDLASK--LIRVVTIAPGLFDTPLLASLPAEAKASLGQQVPHP-SRLGNPDEYGALVLHIIENPMLNGEVIRLDGAIRMAPR
1ZK1 Chain:A ((8-232))
------VAIITGGTLGIGLAIATKFVEEGAKVMITDRHSD--VGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVSTLVNNAG----IAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRM-KNKGLGAS---IINMSSIEGFVGDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPG-AEEAMSQRTKTPMGHIGEPNDIAYICVYLASN-------------------
General information:
TITO was launched using:
RESULT:
Template:
1ZK1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117849 for 1754 contacts (-67.2/contact) +
2D Compatibility (PS) -22541 + (NN) -6386 + (LL) 2164
1D Compatibility (HY) -12000 + (ID) 3950
Total energy: -160562.0 ( -91.54 by residue)
QMean score : 0.563
(partial model without unconserved sides chains):
PDB file :
Tito_1ZK1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZK1-query.scw
PDB file :
Tito_Scwrl_1ZK1.pdb
: