Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKSFYDAVGGAKTFDAIVSRFYAQVAEDEVLRRVYPEDDLAGAEERLRMFLEQYWGGPRTYSEQRGHPRLRMRHAPFRISLIERDAWLRCMHTAVASIDSETLDDEHRRELLDYLEMAAHSLVNSPF
2BKM Chain:A ((2-124))
QWQTLYEAIGGEETVAKLVEAFYRRVAAHPDLRPIFPD-DLTETAHKQKQFLTQYLGGPPLYTAEHGHPMLRARHLRFEITPKRAEAWLACMRAAM---DEIGLSGPAREQFYHRLVLTAHHMVNTP-
General information:
TITO was launched using:
RESULT:
Template:
2BKM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63480 for 872 contacts (-72.8/contact) +
2D Compatibility (PS) -13567 + (NN) -10772 + (LL) 376
1D Compatibility (HY) -10000 + (ID) 2350
Total energy: -99793.0 ( -114.44 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_2BKM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BKM-query.scw
PDB file :
Tito_Scwrl_2BKM.pdb
: