Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALIN-------------LDPAAPI------------VVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGHGSSGGHASL
4GV8 Chain:D ((3-154))
--NTLQVRLLSENARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLLTSRSGVSSKTHLVI--ETGKIDAGYHGNLGINIKNDAIASNGYITPGVFDIKGEIDLSDAIRQYGTYQINEGDKLAQLVIVPIWTPELKQVEEFE-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4GV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92849 for 863 contacts (-107.6/contact) +
2D Compatibility (PS) -14174 + (NN) -5651 + (LL) 0
1D Compatibility (HY) -11200 + (ID) 2500
Total energy: -126374.0 ( -146.44 by residue)
QMean score : 0.335
(partial model without unconserved sides chains):
PDB file :
Tito_4GV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GV8-query.scw
PDB file :
Tito_Scwrl_4GV8.pdb
: