Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEPDVAGAPASKPEPASTGAASAAQLSGYSRVLLKLGGEMFGGG-QVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMA-KAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVTT
1Z9D Chain:A ((4-239))
--------------------------EPKYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVS-
General information:
TITO was launched using:
RESULT:
Template:
1Z9D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -208041 for 1948 contacts (-106.8/contact) +
2D Compatibility (PS) -25671 + (NN) -11290 + (LL) 1036
1D Compatibility (HY) -20000 + (ID) 6350
Total energy: -270316.0 ( -138.77 by residue)
QMean score : 0.660
(partial model without unconserved sides chains):
PDB file :
Tito_1Z9D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z9D-query.scw
PDB file :
Tito_Scwrl_1Z9D.pdb
: