Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADPRPDPDELARRAAQVIADRTGIGEHDVAVVLGSGWLPAVAALGSPTTVLPQA------ELPGFVPPTAAGHAGELLSVPIGAHRVLVLAGRIHAYEGHDLRYVVHPVRAARAAGAQIMVLTNAAGGLRADLQVGQPVLISDHLNL---TARSPL-------VGGEFVDLTDAYSPRLRELARQSDPQ------LAEGVYAGLPGPHYETPAEIRMLQTLGADLVGMSTVHETIAARAAGAEVLGVSLVTN--LAAGITGEPLSHAEVLAAGAASATRMGALLADVIARF |
1YRY Chain:E ((27-280)) | -----------------------------VAIICGSG-------LGGLTDKLTQAQIFDYSEIPNFPRSTVPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLWKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTWKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKVIMDYESLEKANHEEVLAAGKQAAQKLEQFVSILMA-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YRY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -161997 for 1941 contacts (-83.5/contact) +
2D Compatibility (PS) -24231 + (NN) -1809 + (LL) 2432
1D Compatibility (HY) -20000 + (ID) 5100
Total energy: -210705.0 ( -108.55 by residue)
QMean score : 0.549
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