Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDRYCVFGNPIGHSKSPLIHRLFAEQTGEALVYDAQLAPLDDFPGFARRFF-EQGKGANVTVPFKEEAYRLVDELSERATRAGAVNTLIRLADGRLRGDNTDGAGLLRDLTANAGVELRGKRVLLLGAGGAVRGVLEPFLGECPAELLIANRTARKAVDLAERFADLGAVHGCGFAEVEGPFDLIVNGTSASLAGDVPPLAQSVIEPGRTVCYDMMYAKEPTAFNRWAAERGAAR-TLDGLGMLVEQAAEAFFLWRGVRPASAPVLETLRRQLATV |
3O8Q Chain:A ((8-279)) | IDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLDDGEILGDNTDGEGLVQDL-LAQQVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSAS----LPAIDPVIFSS-RSVCYDMMYGKGYTVFNQWARQHGC-AQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKNLEGA |
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General information:
TITO was launched using:
| RESULT:
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Template: 3O8Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158071 for 2320 contacts (-68.1/contact) +
2D Compatibility (PS) -28663 + (NN) -12545 + (LL) 96
1D Compatibility (HY) -27600 + (ID) 7150
Total energy: -233933.0 ( -100.83 by residue)
QMean score : 0.524
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