Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------MPVLALRLTALAALVISVSGCVM---EAYGSRARSDAQSWIGLPIQDVIKRFGEPERVT-GDAARQKYVWKEYENYSHDYDYTYYEQG----HGNTPNSSVLNQKTGTANQSGYYTCI----YEFFADASGRVVDATARGECR
1HZM Chain:A ((1-154))
MIDTLRPVPFASEMAISKTVAWLNEQLELGNERLLLMDCRPQELYESSHIESAINVAIPGIMLRRLQKGNLPVRALFTRGEDRDRFTRRCGTDTVVLYDESSSDWNENTGGESLLGLLLKKLKDEGCRAFYLEGGFSKFQAEFSLHCETNLDGS--
General information:
TITO was launched using:
RESULT:
Template:
1HZM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26956 for 959 contacts (-28.1/contact) +
2D Compatibility (PS) -13539 + (NN) -2277 + (LL) 156
1D Compatibility (HY) -3200 + (ID) 750
Total energy: -46566.0 ( -48.56 by residue)
QMean score : 0.111
(partial model without unconserved sides chains):
PDB file :
Tito_1HZM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HZM-query.scw
PDB file :
Tito_Scwrl_1HZM.pdb
: