Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRSNGSSSRRTFLRLAALLLPAGALLGSLPGVRAAARPRKLYLAGPDVFRADAVAHGEALKALCARYGFEGLYPLDNALPKQLAEPREQAAWIYRANIGLIERADAVLANLNFFRGAEPDSGTAFEVGYATALGKPVYGYVDDAGSYAERIRRHAPELIGEDPTRDRDGMTLEEFGLPLNLMLAVPATLVVGDAEQALRQLASRRHG---
4JEM Chain:A ((14-170))
----------------------------AVGSVFLGGPFRQLVDPRTGVMSSGDQNVFSRLIEHFESRGTTVYNAHRREAW---GAEFLSPAEATRLDHDEIKAADVFVAFP----GVPASPGTHVEIGWASGMGKPMVLLLERDEDYAFLVTGL------------ESQANVEILRFS-------GTEEIVERLDGAVARVLGRAGEPTV
General information:
TITO was launched using:
RESULT:
Template:
4JEM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45653 for 1182 contacts (-38.6/contact) +
2D Compatibility (PS) -16679 + (NN) -10860 + (LL) 3640
1D Compatibility (HY) -5200 + (ID) 1350
Total energy: -76102.0 ( -64.38 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_4JEM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JEM-query.scw
PDB file :
Tito_Scwrl_4JEM.pdb
: