Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTDNDDRIKLEASWKEALREEFDKPYMKQL-GEFLRQEKAAGKVIFPPGPLIFNALNTTPLENVKVVIIGQDPYHGPGQAHGLCFSVQPGVPTPPSLQNIYKEL-NRDLNIPIPNNGYLQRWAEQGVLLLNTSLTVEQAKAGSHANAGWQPFTDRVIEVVNERCERLVFLLWGSHAQSKQKLIDPQRHLILKSAHPSPLSAYRGFLGNGHFSRTNKFLEQNGKTPIDWSLPDL
2C53 Chain:A ((28-244))
---------IDDAWRPLMEPELANPLTAHLLAEYNR--RCQTEEVLPPREDVFSWTRYCTPDEVRVVIIGQNPYHHPGQAHGLAFSVRANVPPPPSLRNVLAAVKNCYPEARMSGHGCLEKWARDGVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIR-PDPRVHCVLKFSNPSPLSKV-PFGTCQHFLVANRYLETRSISPIDWSV---
General information:
TITO was launched using:
RESULT:
Template:
2C53.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96322 for 1726 contacts (-55.8/contact) +
2D Compatibility (PS) -23327 + (NN) -13496 + (LL) 780
1D Compatibility (HY) -18000 + (ID) 4500
Total energy: -154865.0 ( -89.72 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_2C53.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C53-query.scw
PDB file :
Tito_Scwrl_2C53.pdb
: