Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKQIPVQDVTPPAKGDTNNNDLYAKREKIYTRAFTGIFRRLRMVGGAALFLLYFGTVWLNWSGRQAVWWDLPERKFYIFGATFWPQDFMLLSWLLIVCAFGLFFITVFAGRVWCGYTCPQSVWTWIYMWCEKVTEGDRNQRIKLDKAPMSGNKLLRKTAKHSLWLLIGLVTGLTFVGYFSPIRELIPELLT-------GQADGWAYFWVGFFTLATYGNAGWLRE-QVCIYMCP-YARFQSVMFDKDTLIVSYDPR------------RGEKRGPRKKSLDYKAQGLGDCIDCTMCVQVCPTGIDIRDGLQIECIGCAACIDACDSI------------MEKMNYPKGLISYTTEHNLNGQKTHLARPRLIGYAIALVLMISALITAVVLRPLVGFDVSKDRVLYRENELGRIENVYSLKIMNKDQQDHTYILGAKGLEGLTLEGRRELKVAAGDILNLPMELSIEPEKLPSTTNEIVFTIESADDPSIHKEAKSRFIGPRTR |
1E7P Chain:K ((1-239)) | ----------------------------------------------------------------------------------------------------------------------------------------MGRMLTIRVFK----YDPQSAVSKPHFQEYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLTKDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAACGTKIMRED-----FVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLL-----ACHDVCPKNLPLQSKIAYLRRKMVSVN------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1E7P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -156232 for 1485 contacts (-105.2/contact) +
2D Compatibility (PS) -21095 + (NN) 2967 + (LL) 18844
1D Compatibility (HY) -10400 + (ID) 1650
Total energy: -167566.0 ( -112.84 by residue)
QMean score : 0.292
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