Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRNVMLITGASRGIGAATALLAAERGYAVVLNYLRNREAAEALRQRIERQGGEALAVAADVAEEGDVERLFASIDERFGRLDVLVNNAGM----LEAQTRLENIDAARLHRVFATNVTGSFLCAREAVKRLSTRHGGRGGSIVNVSSMASRLGSPNEYIDYAAAKGAIDSMTIGLAREVAAEGIRVNAVRPGLIDTEIHASGGEPGRIERLKGGIPLGRGGTAEEVARAILWLASDEASYSTGTFIDVSGGR
4CQM Chain:F ((8-239))
MDKVCAVFGGSRGIGRAVAQLMARKGYRLAV-IARNLEGAKAAAGDL---GGDHLAFSCDVAKEHDVQNTFEELEKHLGRVNFLVNAAGINRDGLLVRTKTEDM-VSQLH----TNLLGSMLTCKAAMRTMIQQ---QGGSIVNVGSIVGLKGNSGQSV-YSASKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDMTKDLKE----EHLKKNIPLGRFGETIEVAHAVVFLL--ESPYITGHVLVVDGG-
General information:
TITO was launched using:
RESULT:
Template:
4CQM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134153 for 1958 contacts (-68.5/contact) +
2D Compatibility (PS) -25195 + (NN) -10803 + (LL) 348
1D Compatibility (HY) -19200 + (ID) 4800
Total energy: -193803.0 ( -98.98 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_4CQM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CQM-query.scw
PDB file :
Tito_Scwrl_4CQM.pdb
: