Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKNFALIGAAGYIAPR-HMRAIKDT-GNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYNILQLRHHQAIIALKDKVAREKSPHKYEVDLTYITSRGNWYLKSWKGDPRKSFGVATNIGVHFYDMLHFIFGKLQRNVVH-------FTSEYKAAGYLEYEQARVRWFLSVDANDL-P-E--SVKGKKPT---------------------YR--------SI-TVNGE--E----MEFSEGFTDLHTTSYEEILAGRGY--GIDDARHCVETVNTIRSAVIVPASDNEGHPFVAALAR |
| 3GDO Chain:A ((13-352)) | TIKVGILGYG-LSGSVFHGPLLDVLDEYQISKIMTSRTEE--VKRDFPDAEVVHELEEITN---------DPAIELVIVTTPSGLHYEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISEGSLEDINTYQVSYNRYRPE-V----------ATGTLYDLGSHIIDQTLHLFGMPKAVTANVMAQRENAETVDYFHLTLDYGKLQAILYGGSIVPANGPRYQIHGKDSSFIKYGIDGQEDALRAGRKPEDDSWGADVPEFYGKLTTIRGSDKKTETIPSVNGSYLTYYRKIAESIREGAALPVTAEEGINVIRIIEAAMESSKEKR-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158880 for 2204 contacts (-72.1/contact) +
2D Compatibility (PS) -29550 + (NN) -1491 + (LL) 1224
1D Compatibility (HY) -1600 + (ID) 2150
Total energy: -192447.0 ( -87.32 by residue)
QMean score : 0.432
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