Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSELNLTTDEARVSYGIGRQLGDQLRENPVPGMTLDAVLAGLSDAFAGIDSRVSGEALSASFQVIRERMQAEAQAKAEAAAGEGRAYLAENAKREGVTVLPSGLQFEVLSTGEGAK-PSREDTVRTHYHGTLIDGTVFDSSYQRGQPAEFPVGG--VIAGWVEALQLMNAGSKWRLHVPSELAYGGQA-VGSIPPHSVLVFDVELLEIL
1FKL Chain:A ((1-106))
------------------------------------------------------------------------------------------------------GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPNATLIFDVELLKL-
General information:
TITO was launched using:
RESULT:
Template:
1FKL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55268 for 728 contacts (-75.9/contact) +
2D Compatibility (PS) -10997 + (NN) -1222 + (LL) 7204
1D Compatibility (HY) -6800 + (ID) 2250
Total energy: -69333.0 ( -95.24 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_1FKL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FKL-query.scw
PDB file :
Tito_Scwrl_1FKL.pdb
: