Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQRVYVALGSNLAEPREQIQAALDAFERLPETRLVAVSPLYISDPLGPADQPRFVNGVAALDTNLAPLDLLDALQAIELEQ-GRVRDLRWGPRTLDLDILLF----GEQLL-DLPRLKVPHYHMQARAFVLYPLADLAPDLRLPDGRHLPELLAACPFEGIERLPGA
2BMB Chain:A ((19-167))
--KRAFLAFGSNIGDRFKHIQMALQLLSREKTVKLRNISSIFESEPMYFKDQTPFMNGCVEVETLLTPSELLKLCKKIEYEELQ---------RTIDLDIVMFLNSAGEDIIVNEPDLNIPHPRMLERTFVLEPLCELISPVHL------------------------
General information:
TITO was launched using:
RESULT:
Template:
2BMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87817 for 923 contacts (-95.1/contact) +
2D Compatibility (PS) -13588 + (NN) -6095 + (LL) 1780
1D Compatibility (HY) -12800 + (ID) 2450
Total energy: -120970.0 ( -131.06 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_2BMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BMB-query.scw
PDB file :
Tito_Scwrl_2BMB.pdb
: