Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQAIKSNESFKSIIN--SDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
3QFA Chain:C ((16-116))
---IESKTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFFKKGQKVGEFS--GA-NKEKLEATINELV-
General information:
TITO was launched using:
RESULT:
Template:
3QFA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63222 for 716 contacts (-88.3/contact) +
2D Compatibility (PS) -10624 + (NN) -2281 + (LL) 716
1D Compatibility (HY) -8400 + (ID) 1400
Total energy: -85211.0 ( -119.01 by residue)
QMean score : 0.688
(partial model without unconserved sides chains):
PDB file :
Tito_3QFA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QFA-query.scw
PDB file :
Tito_Scwrl_3QFA.pdb
: