Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIWDAYDQYGFITGLTLNRDQNIPQGLFHLVVDVILFHEDGDVLMMKRHPKKKAFPAYFEATAGGSALKGENAKQAILRELKEETGIVPQCLTFLNREWFS---ERSYFVDHFIAKYNGAKDIITLQEGETVDYIWLKPEYIDLFLSKNKLIPSQIKLLKSLI
1SJY Chain:A ((7-140))
-----------------------THVPVELRAAGVVLLNERGDILLVQEKGI--EKAGLWHIP-SGAVEDGENPQDAAVREACEETGLRVRPVKFLGAYLGRFPDGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSREDFAQLYAAGQIRMYQTKLFYADA
General information:
TITO was launched using:
RESULT:
Template:
1SJY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65786 for 887 contacts (-74.2/contact) +
2D Compatibility (PS) -13616 + (NN) -2162 + (LL) 1672
1D Compatibility (HY) -2400 + (ID) 1150
Total energy: -83442.0 ( -94.07 by residue)
QMean score : 0.354
(partial model without unconserved sides chains):
PDB file :
Tito_1SJY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SJY-query.scw
PDB file :
Tito_Scwrl_1SJY.pdb
: