Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---MLIVLAGTIGAGKSSLAAALGQHLGTDVF-------YEAVDNNPVLDLYYQDPKKYAFLLQIFFLNKRFQSIKEAYKANNNVLDRSIFEDE-LFLTLNYKNGNVTKTELDIYKELLANMLEELEGMPKKRPDLLVYIDVSFDKMLERIDKRGRSFEQVDSNPELYDYYKQVHSEYPEWYENYDVSPKIRIDGNKLDFVKNPEDLQHVLDTIDSELQKLDLL
1J90 Chain:A ((18-212))
TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESI----HVQADLIIYLRTSPEVAYERIRQRARSEESCVP----LKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLE---------------------
General information:
TITO was launched using:
RESULT:
Template:
1J90.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70805 for 1356 contacts (-52.2/contact) +
2D Compatibility (PS) -19917 + (NN) -9441 + (LL) 1648
1D Compatibility (HY) -13200 + (ID) 2050
Total energy: -113765.0 ( -83.90 by residue)
QMean score : 0.431
(partial model without unconserved sides chains):
PDB file :
Tito_1J90.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J90-query.scw
PDB file :
Tito_Scwrl_1J90.pdb
: