Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRMKKLNSSDDGTQGCMGLPCVVM
2FN4 Chain:A ((8-176))
-ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ--------------------
General information:
TITO was launched using:
RESULT:
Template:
2FN4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101659 for 1384 contacts (-73.5/contact) +
2D Compatibility (PS) -18971 + (NN) -11396 + (LL) 764
1D Compatibility (HY) -16800 + (ID) 4800
Total energy: -152862.0 ( -110.45 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_2FN4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FN4-query.scw
PDB file :
Tito_Scwrl_2FN4.pdb
: