Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQQKSLTLIVALTTSYGIGRSNSLPWKLKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQFRPLKGRINVVITRNESLDLGNGIHSAKSLDHALELLYRTYGSESSVQINRIFVIGGAQLYKAAMDHPKLDRIMATIIYKDIHCDVFFPLKFRDKEWSSVWKKEKHSDLESWVGTKVPHGKINEDGFDYEFEMWTRDL
3S9U Chain:A ((5-164))
-----RVSFMVAMDENRVIGKDNNLPWRLPSELQYVKKTTMG----------HPLIMGRKNYEAIG---RPLPGRRNIIVTRNEGYH-VEGCEVAHSVEEVFELCK---------NEEEIFIFGGAQIYDLFL--PYVDKLYITKIHHAFEGDTFFPEMD-M----TNWKEVFVEK----------GLTDEKNPYTYYYHVYEKQ-
General information:
TITO was launched using:
RESULT:
Template:
3S9U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108018 for 1175 contacts (-91.9/contact) +
2D Compatibility (PS) -17337 + (NN) -4304 + (LL) 3004
1D Compatibility (HY) -12800 + (ID) 2600
Total energy: -142055.0 ( -120.90 by residue)
QMean score : 0.463
(partial model without unconserved sides chains):
PDB file :
Tito_3S9U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3S9U-query.scw
PDB file :
Tito_Scwrl_3S9U.pdb
: