Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRPLNCIVAVSQNMGIGKNGDLPWPLLRNEFKYFQRMTTT---------------------SSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINIVLSRELKEP--PQGAHFLAKSLDDALKLIEQPELASKVDMVWVVGGSSVYQEAMNQPGHLRLFVTRIMQEFESDTFFPEIDLEKYKLLPEYPGVLSEIQEEKGIKYKFEVYEKKD
1J3K Chain:A ((25-229))
-EGKKNEVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKET---KKLQNVVVMGRTNWESIPKKFKPLSNRINVILSRTLKKEDFDEDV-YIINKVEDLIVLLGK----LNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYECDVFFPEINENEYQIISV-----SDVYTSNNTTLDFIIYKKT-
General information:
TITO was launched using:
RESULT:
Template:
1J3K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60805 for 1139 contacts (-53.4/contact) +
2D Compatibility (PS) -18731 + (NN) -9128 + (LL) 744
1D Compatibility (HY) -16800 + (ID) 2850
Total energy: -107570.0 ( -94.44 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_1J3K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J3K-query.scw
PDB file :
Tito_Scwrl_1J3K.pdb
: