Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AFYKREMFDPAEKYKMDHRRRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVKCFNDLKAEELLLKIHEVSTVSHADADCFVCVFLSHGEGNHIYAYDAKIEIQTLTGLFKGDKCHSLVGKPKIFIIQACRGNQHDVPVIPLDVVDNQTEKLDTNITEVDAASVYTLPAGADFLMCYSVAEGYYSHRETVNGSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCKDPSAIGKKQVPCFASMLTKKLHFFPKSN
2DKO Chain:A ((3-145))
-------ISLDNSYKMDYPEMGLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVRNKNDLTREEIVELMRDVSKEDHSKRSSFVCVLLSHGEEGIIFGTNGPVDLKKITNFFRGDRCRSLTGKPKLFIIQACRGTELDCGIE------------------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2DKO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102972 for 1011 contacts (-101.9/contact) +
2D Compatibility (PS) -14927 + (NN) -1796 + (LL) 8512
1D Compatibility (HY) -11600 + (ID) 2800
Total energy: -125583.0 ( -124.22 by residue)
QMean score : 0.287
(partial model without unconserved sides chains):
PDB file :
Tito_2DKO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DKO-query.scw
PDB file :
Tito_Scwrl_2DKO.pdb
: