Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MAGAPGPLRLALLLLGMVGRAGPRPQGATVSLWETVQKWREYRRQC---QRSLTEDPPPATDLFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRFCTAEGLWLQKDNSSLPWRDLSECEESKRGERSSPEEQLLFLYIIYTVGYALSFSALVIASAILLGFRHLHCTRNYIHLNLFASFILRALSVFIKDAA-LKWMYSTAAQQHQWDGLLSYQDSLSCRLVFLLMQYC-VAANYYWLLVEGVYLYTLLAFSVLSEQWIFRLYVSIGWGVPLLFVVPWGIVKYLYEDEG---CW---TRNSNMNYWLIIRLPILFAIGVNFLIFVRVICIVVSKLKANLMCKTDIKCRLAKSTLTLIPLLGTHEVIFAFVMDEHARGTLRFIKLFTELSFTSFQGLMVAILYCFVNNEVQLEFRKSWERWRLEHLHIQRDSSMKPLKCPTSSLSSGATAGSSMYTATCQASCS---- |
| 4JKV Chain:A ((2-470)) | GTADLEDNWETLNDNLKVIEKAD-NAAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNAYIQKYLSGQCEVPLVRTDNPKSWYEDVEGCGIQCQNPLFTEAEHQDMHSYIAAFGAVTGLCTLFTLATFVADWRNSNRYPAVILFYVNACFFVGSIGWLAQFMDGARREIVCRADGTMRLGEPTSNETLSCVIIFVIVYYALMAGVVWFVVLTYAWHTSFKALGTTYQPGKTSYFHLLTWSLPFVLTVAILAVAQVDGDSVSGICFVGYKNYRYRAGFVLAPIGLVLIVGGYFLIRGVMTLFSIKSNHPGLL---------SEKAASKINETMLRLGIFGFLAFGFVLITFSCH-FYDFFNQAEWERSFRDYVLCQANCEIK-----------------NRPSLLVEKINLFAMFGTGIAMSTWVWTKATLLIWRRTWC |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JKV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -220727 for 3442 contacts (-64.1/contact) +
2D Compatibility (PS) -43326 + (NN) 6365 + (LL) 2772
1D Compatibility (HY) -8000 + (ID) 2550
Total energy: -265466.0 ( -77.13 by residue)
QMean score : 0.147
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