Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | --MCWTMPS-----PFTGSSTRNME------SGNQSTVTEFIFTGFPQL----QDGSLLYFFPLLFIYTFIIIDNLLIFSAVR-LDTHLHNPMYNFISIFS----FLEIWYTTATIPKMLSNLISEKKAIS------------MTGCILQ-----MYFFHSLENSEGILLTTMAIDRYVAICNPLRYQMIMTPRLCAQLSAGS-------CLFGFLILL--PEIVMISTLPFCG-PNQIHQIFCDLVPVLSLACTDTSMILIEDVIHAVTIII-----TFLII-------ALSYV------RIVTVILRIPSSEG--RQKAFS-TCAGHLMVFPIFFGSVSLMYLRFSDTYPPVLDTAIALMFTVLAPFFNPIIYSLRNKDMNNAIKKLFCLQKVLNKPGG--- |
4U6D Chain:A ((28-409)) | EGFPFILPKEKPNRPLSAAMQRNYDNYMAPRPENNELYTQFKYTELKGFDYNGHDGTISRRDPSKVIYE---NGKYYVWYTYRNTPTPPQGAKNSNDTIPSADWDLAEIWYATS---KDGFTWEEQGVAVPRPPKPNVGWRSVTTTDILKWKGKFYLYYQGFMEASG----TRGDDCPVAVSYADSPDGPWTPHTEVVIPNGKKGEWDQYSIHDPYPIVYKDKIYLYYKSDFDGDPNLVRMQGLAIADNPLGPFKKSPLNPVINSGHETTLFPFKEGMAALVIRDGTEHNTVQYAEDGVNFNIASIVEFMPNAAGPYVADAFTNTKYGRGISWGISHF-----------TNATTWDQNHAVLARFDCDLSLDV-DDPHMKRLGTYFKPEFYYQMGLSKKQRERI |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U6D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -328716 for 2350 contacts (-139.9/contact) +
2D Compatibility (PS) -33105 + (NN) 1193 + (LL) 2384
1D Compatibility (HY) -4000 + (ID) 3100
Total energy: -365344.0 ( -155.47 by residue)
QMean score : 0.164
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