Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGQKIAVVGATGRVGHEVLSILAEFQDEGKISIDSVITFASK-KSKGKKVSFG-----N--E-----ELTVLCLE--NYDFADIDIAIFCAGYHVSEKYVPIATEAGCIVIDNSSYFRMKEGVPLIIPEINKEKIME--Y------KNHNIISNPNCTIIQMLLVLHLLYQKAKIKRIVASTYQSTSGAGKAAMDELYNQTKKIFTNEAKKPEIFPKQIAFNCIPHIGEFMEDGSTKEEWKMQEETKKILEA---------DIKVTATCVRVPVFIGHAIAVNVEFYQHITEEQAREMLSEV----------E--DTGILVYDRRKDGKYITQI-D--VVQENAVYVSRIRKDNTVEHGLNMWIVADNLRKGAALNIVQILEILTREHLSIKCI |
| 1YS4 Chain:A ((7-354)) | MKIKVGVLGATGSVGQRFVQLLAD------HPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSGAGYNGVPSM--------------------AILDNLIPFIK--------NEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEGAEPEEIKEVMDKFDPLKDLNLPTYAKPIVIREEI-----DRPQPRLDRNEGNGMSIVVGRIRKDPI--FDVKYTALEHNTIRGAAGASVLNAEYFVKKYI----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YS4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -225041 for 2646 contacts (-85.0/contact) +
2D Compatibility (PS) -31968 + (NN) -6724 + (LL) 2528
1D Compatibility (HY) -15200 + (ID) 4450
Total energy: -280855.0 ( -106.14 by residue)
QMean score : 0.476
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