Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELNKIAASILLSGLIIMIVSNVVDMLYNPEKYKIEHQTMVATGSNEPQKKIEQVALDIGALMQSASLEKGKSIAKKCIACHSFDKGGANKVGPNLWNIVGNKKAHLGDSFNYSKAMLEKGGKWGYEELFAFLKSPKDYIKGTRMAFAGISNPQEIADLVSYLRQLSDNQVALPK
1CYC Chain:A ((8-102))
-----------------------------------------------------------------------KTFVQKCAQCHTVENGGKHKVGPNLWGLFGRKTGQ-AEGYSYTDANKSKGIVWNENTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS-------
General information:
TITO was launched using:
RESULT:
Template:
1CYC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26597 for 608 contacts (-43.7/contact) +
2D Compatibility (PS) -9914 + (NN) -2664 + (LL) 6628
1D Compatibility (HY) -7600 + (ID) 2000
Total energy: -42147.0 ( -69.32 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1CYC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CYC-query.scw
PDB file :
Tito_Scwrl_1CYC.pdb
: