Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDYAPHTAENVVQNANKLIDVFRKNNGFIAFVRVNFYDGKDVLQPNAMISLP--PKEGDDYSRFHHLLDKRDDDFVIDKRHFSAFVGTDLDLQLRRRGIDTIVLGGVATHIGVDTTARDAYQLNYNQFFVTDMMSAQNETLHQFPIDNVFPLMGQTITTNDFLNILN
1NF9 Chain:A ((51-207))
------LRAGLVANAARLRRWCVEQGVQIAYTAQ-PGSMTEEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE---
General information:
TITO was launched using:
RESULT:
Template:
1NF9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65904 for 1107 contacts (-59.5/contact) +
2D Compatibility (PS) -16617 + (NN) -6224 + (LL) 492
1D Compatibility (HY) -6400 + (ID) 1800
Total energy: -96453.0 ( -87.13 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_1NF9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NF9-query.scw
PDB file :
Tito_Scwrl_1NF9.pdb
: