Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
4KV6 Chain:A ((7-135))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPEFN------EKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLQKAEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
4KV6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50383 for 1040 contacts (-48.4/contact) +
2D Compatibility (PS) -13869 + (NN) -4173 + (LL) 6020
1D Compatibility (HY) -16000 + (ID) 6150
Total energy: -84555.0 ( -81.30 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_4KV6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KV6-query.scw
PDB file :
Tito_Scwrl_4KV6.pdb
: