Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTYNIVALPGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTF---GEPLTEKTLNACKRADAILLGAIGGPKWTDPNNRPEQGLLKLRKSLNLFANIRPTTVVKGASSLSPLKEERVEGTDLVIVRELTSGIY--FGEPRHFN--NHEALDSLTYTREEIERIVHVAFKLAASR-RGKLTSVDKENVLA-SSKLWRKVVNEVSQLYPEVTVNHLLVDACSMHLITNPKQFDVIVCENLFGDILSDEASVIPGSLGLSPSASFS--NDGPRLYEPIHGSAPDIAGKNVANPFGMILSLAMCLRESLNQPD-----AADELEQHIYNMIEHGQTTADLGGKLNTTDIFEILSQKLNH |
3FMX Chain:X ((5-360)) | -SFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEW--ASCDYYLQHGKMMPDDWAEQLKQYDAIYFGAVGWPDKVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPC--ALANRKVGDIDFVVVRENTEGEYSSLGGIMFENTENEIVIQESIFTRRGVDRILKYAFDLAEKRERKHVTSATKSNGMAISMPYWDKRTEAMAAHYPHVSWDKQHIDILCARFVLQPERFDVVVASNLFGDILSDLGPACAGTIGIAPSANLNPERNFPSLFEPVHGSAPDIFGKNIANPIAMIWSGALML-EFLGQGDERYQRAHDDMLNAIERVIADGSVTPDMGGTLSTQQVGAAISDTL-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3FMX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -178799 for 2963 contacts (-60.3/contact) +
2D Compatibility (PS) -36542 + (NN) -16314 + (LL) 76
1D Compatibility (HY) -26400 + (ID) 6400
Total energy: -264379.0 ( -89.23 by residue)
QMean score : 0.525
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