Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSDKYYRSAYMN-VDLNAVASNFKVFSTLHP-NKTVMAVVKANAYGLGSVKVARHLMENGATFFAVATLDEAIELRMHGITAKILVLGVLPAKDIDKAIQHRVALTVPSKQWLKEAIKNISGEQEKKLWLHIKLDTGMGRLGIKDTNT-YQEVIEIIQQYEQLVFEGVFTHFACADEPG-DMTTEQYQRFKDMVNEAI-KPEYIHCQNSAGSLLMDCQFCNAIRPGISLYGYYPSEYVQQK-VKVHLKPSVQLIANVVQTKTLQAGESVSYGATYTATDPTTIALLPIGYADGYLRIMQGSFVNVNGHQCEVIGRVCMDQTIVKVPDQVKAGDSVILIDNHRESPQSVEVVAEKQHTINYEVLCNLSRRLPRIYHDGDQRFVTNELLK |
| 1BD0 Chain:A ((4-376)) | -----FHRDTWAEVDLDAIYDNVENLRRLLPDDTHIMAVVKANAYGHGDVQVARTALEAGASRLAVAFLDEALALREKGIEAPILVLGASRPADAALAAQQRIALTVFRSDWLEEASALY--SGPFPIHFHLKMDTGMGRLGVKD-EEETKRIVALIERHPHFVLEGLYTHFATADEVNTDYFSYQYTRFLHMLEWLPSRPPLVHCANSAASLRFPDRTFNMVRFGIAMYGLAPSPGI-KPLLPYPLKEAFSLHSRLVHVKKLQPGEKVSYGATYTAQTEEWIGTIPIGYADGWLRRLQHFHVLVDGQKAPIVGRICMDQCMIRLPGPLPVGTKVTLIGRQGDEVISIDDVARHLETINYEVPCTISYRVPRIFFRHKRIME------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BD0.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -262661 for 3106 contacts (-84.6/contact) +
2D Compatibility (PS) -39130 + (NN) -5186 + (LL) 724
1D Compatibility (HY) -31600 + (ID) 7850
Total energy: -345703.0 ( -111.30 by residue)
QMean score : 0.516
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