Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MKNKYISKLLVG--AATITLATMISNGEAKASENTQQTSTKHQTTQNNYVTDQQKAFY-QVLHLKGITEEQRNQYIKTLREH-PERAQEVFSESLKDSKNPDR-RVAQQNAFYNVLKNDNLTEQEKNNYIAQIKENPDRSQQVWVESVQSSKAKERQNIENADKAIKDFQDNKAPHDKSAAYEANSKLPKDLRDKNNRFVEKVSIEKAIVRHDERVKSANDAISKLNEKDSIENRRLAQREVNKAPMDVKEHLQKQLDALVAQKDAEKKVAPKVEAPQIQSPQIEKPKAESPKVEVPQIQSPKVEVPQSKLLGYYQSLKDSFNYGYKYLTDTYKSYKEKYDTAKYYYNTYYKYKGAIDQTVLTVLGSGSK---SYIQPLKVDDKNGYLAKSYAQVRNYVTESINTGKVLYTFYQNPTLVKTAIKAQETASSIKNTLSNLLSFWK |
| 4USR Chain:A ((1-357)) | GPAMPPILDVIVIGGGQAALTTAYFLR-----------------RTSLSYLLLDEQPGPGGAWLH-----------AWDSLRLFSPAAWSSIAGWPMPSPTEPGNPTRNDVIDYLRRYEDRYQFPIQRPVRVDTVTRLDD----LWRVQAGDQQWLARAVISATGTWSKPFIP---PYEGRELFQGAQIHSAHYRTP-----APFAGKRVMVVGGG--NSGAQVLAELSSVS----------ETLWITQEPPAFLPDEVDGRVLFERATARWKAQQEGRSIDEPAGGFGDI--------VMVPPVREARERGVLVAERPFARFTETGVEWADGRRENLD------------------------AVIWCSGFRPALDHLRELGVVEADGKVQVEDTRVVK-QPNLWLVGYGDWTGMASATLIGVTRTARSTADQVVQALTATP---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4USR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 102701 for 2819 contacts (36.4/contact) +
2D Compatibility (PS) -35136 + (NN) -2816 + (LL) 5728
1D Compatibility (HY) -7200 + (ID) 2500
Total energy: 60777.0 ( 21.56 by residue)
QMean score : 0.157
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