Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKQIKALALFSGGLDSLLSMKLLIDQ-GIEVTALHFNIGFGGNKDKREYFENATAQIGAKLLVCDIREQFFNDVLFKPKY-------GYGKYFNPCIDCHANMFRNAFYKMLELDADFVLSGEVLGQRPKSQRKEALNQVR---KLVREVGEEARFDLILDRTQA------------SGEKPQFLDELLL-RPMSAKLLE-----------------------------------PTFMEKKGWVDREKLLDVSGRGRAR----QLQMIKD-----YGLKYYEKPGGGCLLTDIQVSNKI----KNLKEYREMVFEDGVIVKNGRYF---VLPHNARLVVARNEEENHKLDIEHPLMDKIELLGCKGPLSLVDKNASQEDKELAGRIALGYAKTLKNQAYLIQIGNEKRELYPLDKENAREYLFA |
1KOR Chain:A ((1-395)) | ---MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADIGQG--EEVEEAREKALRTGASKAIALDLKEEFVRDFVFPMMRAGAVYEG---YYLLGTSIARPLIAKHLVRIAEEEGAEAIAHGATGKGNDQVRFELTAYALKPDIKVIAPWREWSF----QGRKEMIAYAEAHGIPVP----PYSMDANLLHISYEGGVLEDPWAEPPKGMFRMTQDPEEAPDAPEYVEVEFFEGDPVAVNGERL-SPAALLQRLNEIGGRHGVGRVDIVENRFVGMKSRGVYETPGGTILYHARRAVESLTLDREVLHQRDMLSPKYAELVYYGFWYAPEREALQAYFDH-VARSVTGVARLKLYKG-NVYVVGRKAPKSLYR--------GYDQKDAEGFIKIQALRLRVRALVER------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1KOR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -58375 for 2291 contacts (-25.5/contact) +
2D Compatibility (PS) -31693 + (NN) 1279 + (LL) 2340
1D Compatibility (HY) -4800 + (ID) 2900
Total energy: -94149.0 ( -41.10 by residue)
QMean score : 0.267
|
|
|