Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAYNPKILQKPKEGEEITIKDGKLHVPN--YPIIPFIEGDGIGSDITPAMIKVVDSAVQKAYKGEKKIAWYEVFVGEKCYQKF-KDHKELSPEEQWLLPDTIEAINHYKVSIKGPLTTPIGEGFRSLNVALRQKMDLYVCLRPVRWY-GSPSPVKEPQKVDMVIFRENSEDIYAGIEWQEGSAEAKKLIHFLQNELKVEKIRFPESSGVGIKPISKEGTERLVRKAIEYAIDNDKPSVTFVHKGNIMKYTEGAFMKWGYALAQKEFNAQVIDKGPWCSLKNPKTGKEIIIKDMIADAFLQQILLRPSEYSVIATMNLNGDYISDALAAMVGGIGIAPGANLNDTVGMFEATHGTAPKYAGLDKVNPGSIILSAEMMLRHMGWVEAADLIVSAMEKAIKSKK-VTYDFARLMDGAKEVKCSEFASVMIENM |
| 2D1C Chain:A ((8-355)) | -------------------TGKKMHVLEDGRKLITVIPGDGIGPECVEATLKVLEAAKA-------PLAYEVREAGASVFRRGIA---------SGVPQETIESIRKTRVVLKGPLETPVGYGEKSANVTLRKLFETYANVRPVREFPNVPTPY-AGRGIDLVVVRENVEDLYAGIEHMQTP-----------------------SVAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCATKSNIMKLAEGTLKRAFEQVA-QEYPD-------------------IEAVHIIVDNAAHQLVKRPEQFEVIVTTNMNGDILSDLTSGLIGGLGFAPSANIGNEVAIFEAVHGSAPKYAGKNVINPTAVLLSAVMMLRYLEEFATADLIENALLYTLEEGRVLTGDVVGYD---RGAKTTEYTEAIIQNL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2D1C.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204840 for 3048 contacts (-67.2/contact) +
2D Compatibility (PS) -37672 + (NN) -17360 + (LL) 5072
1D Compatibility (HY) -21200 + (ID) 6400
Total energy: -282400.0 ( -92.65 by residue)
QMean score : 0.497
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