Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVH-----SKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL
1Z5N Chain:A ((12-239))
--KIGIIGAMEEQVTLLRDKI-ENRQTISLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAKIRHNFP----QAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSSLMVESLVQKL
General information:
TITO was launched using:
RESULT:
Template:
1Z5N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -147631 for 1978 contacts (-74.6/contact) +
2D Compatibility (PS) -23434 + (NN) -4242 + (LL) 556
1D Compatibility (HY) -15200 + (ID) 4000
Total energy: -193951.0 ( -98.05 by residue)
QMean score : 0.506
(partial model without unconserved sides chains):
PDB file :
Tito_1Z5N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z5N-query.scw
PDB file :
Tito_Scwrl_1Z5N.pdb
: