Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIAMANFKSAMPVFKSHAYLKELEKTLKPQHFDRVFVFPDF-LGLLPNAFLH-----FTLGAQNAYPRDCGAFTGEITSKHLEELKIHTLLIGHSERRVLLKESPSFLKEKFDFFKGKNFKIVYCIGEDLTTREKGFRAVKEFLSEQLENIDLNYS-----NLIVAYEPIWAIGTKKSASLEDIYLTHGFLKQIL--------NQKTPLLYGGSVNAQNAKEILGIDSVDGLLIGSASLELENFKTIISFL
3UWV Chain:B ((11-253))
-TPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESG--KANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGA
General information:
TITO was launched using:
RESULT:
Template:
3UWV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140580 for 1839 contacts (-76.4/contact) +
2D Compatibility (PS) -23718 + (NN) -8038 + (LL) 440
1D Compatibility (HY) -12800 + (ID) 3900
Total energy: -188596.0 ( -102.55 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_3UWV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWV-query.scw
PDB file :
Tito_Scwrl_3UWV.pdb
: