Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPFINIKLVPENGGPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESIHHLRQKN
2X4K Chain:A ((3-62))
MPIVNVKLLE---GRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKPNHYGVAGVRKSD-----
General information:
TITO was launched using:
RESULT:
Template:
2X4K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17290 for 327 contacts (-52.9/contact) +
2D Compatibility (PS) -6978 + (NN) -4989 + (LL) 232
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -34475.0 ( -105.43 by residue)
QMean score : 0.704
(partial model without unconserved sides chains):
PDB file :
Tito_2X4K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2X4K-query.scw
PDB file :
Tito_Scwrl_2X4K.pdb
: