Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKFFNQFFENIGEDKNREGLKETPKRVQELW-KFLYKG--YKEDPRVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFFGNISVGYIPKEKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRAEFMQLLKS
4DU6 Chain:C ((55-220))
--------------DLTDDSLADTPRRIAKMYVDEIFSGLDYENFPKITLIQNKMK--VDEMVTVRDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQILLALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRQEFLRAVRH
General information:
TITO was launched using:
RESULT:
Template:
4DU6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102487 for 1210 contacts (-84.7/contact) +
2D Compatibility (PS) -17397 + (NN) -611 + (LL) 1124
1D Compatibility (HY) -14000 + (ID) 2650
Total energy: -136021.0 ( -112.41 by residue)
QMean score : 0.527
(partial model without unconserved sides chains):
PDB file :
Tito_4DU6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DU6-query.scw
PDB file :
Tito_Scwrl_4DU6.pdb
: