Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKKWKRDHLGMVMGILNVTPDSFSDGGKYMQVEEAVARALQMAEDGAAIIDVGGISTRPGFSEVTPDEELARIIPVIKAVRTKLPDIWISVDSWRAEVAEQAILAGADMINDQWGAKKEPKIAEVAAKYDVPICLMHNRENA--------QYDNFLEDVKKDLLESIAIAKAASVPDEHIILDPGFGFVKTPAQNLEVLRRIDEIVALGYEVLLGTSRKSTIGLVLGTTPG------DRMEGTGATTVYGFSKGCTITRVHDVLPIARMVRMTDAITGKLDITNL
1EYE Chain:A ((8-272))
-----------VMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGG--------------ETSRVIPVVKELAAQ--GITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVISALAALHGAWGVRVHDVRASVDAIKVVEAWMG-------
General information:
TITO was launched using:
RESULT:
Template:
1EYE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141273 for 2053 contacts (-68.8/contact) +
2D Compatibility (PS) -26177 + (NN) -17406 + (LL) 1712
1D Compatibility (HY) -20000 + (ID) 5050
Total energy: -208194.0 ( -101.41 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_1EYE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EYE-query.scw
PDB file :
Tito_Scwrl_1EYE.pdb
: