Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKLCTISDSQALLEVSYKTFDETFRAQNKPENMDAYLKTNFTAKKLSDELKNP--HSYFYFVFH-QEAIAGYLKLNIGDAQTEEIAGNTIEIERIYVLKSFQKKGLGKELFNQAIEIAKEVDAKKIWLGVWEKNKNAIQFYAKLGFIKNGQHDFFMGDDCQTDIIMIKDL
2CY2 Chain:A ((2-167))
RIRRAGLEDLPGVARVLVDTWRATYRGVVPEAFLEGL-SYEGQAERWAQRLKTPTWPGRLFVAESESGEVVGFAAFGPDRASGF--PGYTAELWAIYVLPTWQRKGLGRALFHEGARLLQAEGYGRMLVWVLKENPKGRGFYEHLGGVLLGEREIELGGAKLWEVAYGF--
General information:
TITO was launched using:
RESULT:
Template:
2CY2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76005 for 1230 contacts (-61.8/contact) +
2D Compatibility (PS) -17450 + (NN) -2464 + (LL) 584
1D Compatibility (HY) -8400 + (ID) 1700
Total energy: -105435.0 ( -85.72 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_2CY2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CY2-query.scw
PDB file :
Tito_Scwrl_2CY2.pdb
: