Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKHYQIAIDQSTSGTKVLLF-KEGKLVDRLDKKHRQLYPKKGWVEHNPIEICQNVRTLIADILT--KHDLITADIERLALTNQRETIVAWDKQTGKPLYNAIVWQCNRTKEICETLKEAGYEKRIKQLTGLKIDSYFSASKMMWLLENISAVRDAASRNQLAFGTMDAWLLFSLTDDSNYFTDRTNASRTLLYDIEKNDWSDELLELFGVKR-AYLPEVKQSAGSFG--------SYQEIPIHSVMADSEAALYGQGCDTFGAVKATLGTGCSVMMQIGENRLPENDAILTTLAWDVAGVN--QFALEGIIRSCGDTLVFLSEQLELFNDYDTACKRAFQLPCNEGVVLIPGQLGLGAPYWNTDIRAEILGLTREHTKWHIIRAGFTSIAFQIKAVIDQMELMIG-QNIKRLQVDGGLTKQHELMQYLADVLKAEVAVSPAEELSAIGAIEIADNNLQNKRTIAKLYQPSITHTHALEDFQEWEKQVKSSILKIQKVRNFK |
2W41 Chain:B ((11-456)) | ------LSIDQSTQSTKVFFYDEELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVIIKCIGITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEFSAKYNNNDIQKKTGTYFNTYFSAFKILWLIQNNPEIKQKIDDGTAVIGNINTWLIFNLT-KGNCYTDVTNASRTLLMDINTLQWDEKMCKIFNITNMSVLPEIKSNCSNFGLVKSEHVPDYLNIPITGCIGDQQSACIGQAIFDEGEAKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGTAGSGVSWLLKN-KLIDDPSEASDIMEKCENTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERSHIVRALLEGIAFQLNEIVDSLTSDMGIEMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVSKYKEVTSLGAAVLA------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2W41.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -255125 for 3732 contacts (-68.4/contact) +
2D Compatibility (PS) -45611 + (NN) -14900 + (LL) 4504
1D Compatibility (HY) -39200 + (ID) 7550
Total energy: -357882.0 ( -95.90 by residue)
QMean score : 0.440
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