Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQEALGLVETKGLVGAIEAADAMVKSANVTLTGYEKIGS--GLVTVMVRGDVGAVKAATEAGAAAAKNVGTVMSTHVIPRPHTDVEEILPVRVKSDE
4RBV Chain:D ((10-97))
--EALGMVETKGLTAAIEAADAMVASANVMLVGYEKIGGSGGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKILP-------
General information:
TITO was launched using:
RESULT:
Template:
4RBV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39527 for 669 contacts (-59.1/contact) +
2D Compatibility (PS) -9530 + (NN) -3902 + (LL) 876
1D Compatibility (HY) -9200 + (ID) 3550
Total energy: -64833.0 ( -96.91 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_4RBV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RBV-query.scw
PDB file :
Tito_Scwrl_4RBV.pdb
: