Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNALGMIETKGLVGAIEAADAMVKAANVSLVGYEKIGS--GLVTVMVRGDVGAVKAATDAGAAAARNVGEVQSIHVIPRPHNDVETLLQKGL
4RBV Chain:D ((10-98))
--EALGMVETKGLTAAIEAADAMVASANVMLVGYEKIGGSGGLVTVIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKILPK--
General information:
TITO was launched using:
RESULT:
Template:
4RBV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45481 for 671 contacts (-67.8/contact) +
2D Compatibility (PS) -9593 + (NN) -3131 + (LL) 132
1D Compatibility (HY) -10400 + (ID) 3550
Total energy: -72023.0 ( -107.34 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_4RBV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RBV-query.scw
PDB file :
Tito_Scwrl_4RBV.pdb
: