Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLFRQDENILNSELAEDLPIPRHVAIIMDGNGRWAKKRFLPRIA-GHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFFDSFVPELIEENVR-VNVMGYRENLPDHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITAAKEAMKELELEGKSADDL----TEEKLNDHLMSSGLGDPDLLIRTSGELRLSNFMLWQLAYSEFYFTDTHWPDFSKEDFLQAIIEYQNRSRRFGGL
2VG0 Chain:A ((2-227))
----------------------LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEICAPANHWSVRTVGDLGLIGEEPARRLRG---AVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR-------
General information:
TITO was launched using:
RESULT:
Template:
2VG0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111253 for 1763 contacts (-63.1/contact) +
2D Compatibility (PS) -23847 + (NN) -7398 + (LL) 2200
1D Compatibility (HY) -18000 + (ID) 4150
Total energy: -162448.0 ( -92.14 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_2VG0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG0-query.scw
PDB file :
Tito_Scwrl_2VG0.pdb
: