Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKSYHVAVVGATGAVGTQMIELLEEAATFKIKQVSFLSSI-RSAGKKLSFR-----G-------EEVTIQEAT--PESFEGVDIALFSAGGSVSKALAKEAVKRGAIVIDNTSAYRMDPTVPLVVPEVNEKALFS----------HNGIIANPNCSTIQMVAALEPIREAFGLNRIIVSTYQAVSGSGVSAIQELKDGSKAVLDNKEFTPQIMPVKGDKKHYPIAFNALPQIDVFTENDYTYEEMKMINETKKIMEDN--------TIKVSATCVRIPVVSGHSESVYIEVDKEGITAKEIQNALKNAPGIVLEDDPA---------NQVYPQAV-Q--AAGKKEVFVGRIRADIDDPKGFHMWIVSDNLLKGAAWNSIQIAESLVKLAII |
1YS4 Chain:A ((7-354)) | --MKIKVGVLGATGSVGQRFVQLLAD---HPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSGAGYNGVPS---------------------------MAILDNLIPFIK--------NEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEG-AEPEEIKEVMDKFDPLKDLNLPTYAKPIVIREEIDRPQPRLDRNEGNGMSIVVGRIRKDPI--FDVKYTALEHNTIRGAAGASVLNAEYFVKKYI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YS4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -132219 for 2643 contacts (-50.0/contact) +
2D Compatibility (PS) -32178 + (NN) -11378 + (LL) 2052
1D Compatibility (HY) -20800 + (ID) 5300
Total energy: -199823.0 ( -75.60 by residue)
QMean score : 0.522
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