Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTKSYHVAVVGATGAVGTQMIELLEEAATFKIKQVSFLSSI-RSAGKKLSFR-----G-------EEVTIQEAT--PESFEGVDIALFSAGGSVSKALAKEAVKRGAIVIDNTSAYRMDPTVPLVVPEVNEKALFS----------HNGIIANPNCSTIQMVAALEPIREAFGLNRIIVSTYQAVSGSGVSAIQELKDGSKAVLDNKEFTPQIMPVKGDKKHYPIAFNALPQIDVFTENDYTYEEMKMINETKKIMEDN--------TIKVSATCVRIPVVSGHSESVYIEVDKEGITAKEIQNALKNAPGIVLEDDPA---------NQVYPQAV-Q--AAGKKEVFVGRIRADIDDPKGFHMWIVSDNLLKGAAWNSIQIAESLVKLAII
1YS4 Chain:A ((7-354))--MKIKVGVLGATGSVGQRFVQLLAD---HPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSNASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKFGLEAVFIATMQAVSGAGYNGVPS---------------------------MAILDNLIPFIK--------NEEEKMQTESLKLLGTLKDGKVELANFKISASCNRVAVIDGHTESIFVKTKEG-AEPEEIKEVMDKFDPLKDLNLPTYAKPIVIREEIDRPQPRLDRNEGNGMSIVVGRIRKDPI--FDVKYTALEHNTIRGAAGASVLNAEYFVKKYI-


General information:
TITO was launched using:
RESULT:

Template: 1YS4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132219 for 2643 contacts (-50.0/contact) +
2D Compatibility (PS) -32178 + (NN) -11378 + (LL) 2052
1D Compatibility (HY) -20800 + (ID) 5300
Total energy: -199823.0 ( -75.60 by residue)
QMean score : 0.522

(partial model without unconserved sides chains):
PDB file : Tito_1YS4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YS4-query.scw
PDB file : Tito_Scwrl_1YS4.pdb: