Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPFLKNKTVLITGASNGLGAEIARQVAMSGGNVIITARSTKKLIELQKDIHDKFSV---EATYFTLDMTDFEQVKQVSAEINASY-QIDVLVNCAGFGLFENAI-DIPFETIEKMFDTNVLGLIQLTQLILPQMQARKAGHIINIASQAAKIATPKSTVYSATKYAVLGFSNALRLELMPDKINVTTINPGPIATNFFDVADKSSNYLETVGKLVLKPEKVAHKTVQIMGTKRREINLPFVMNIATRLYQVMPQVIEFFGKGAFLKK
4QED Chain:B ((3-187))
-------KNVLITGGFKGIGKQVALEFLKNDYHVCITSR----YFEKEKRIPHLFSSYEENISFYQLDVTDEEQVNEIINKIVKKFGRLDVLVNNAGISLSDGLLTETKTTDFNKMINTNILGTYFCMKYALKHMQKVSCGAIVNISSITGLSGFPYSILFGSTKHAVIGLTKGAAVEFADKGIKINAVAPGIIKT------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4QED.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108302 for 1444 contacts (-75.0/contact) +
2D Compatibility (PS) -19446 + (NN) -6385 + (LL) 6284
1D Compatibility (HY) -15200 + (ID) 3050
Total energy: -146099.0 ( -101.18 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_4QED.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4QED-query.scw
PDB file :
Tito_Scwrl_4QED.pdb
: