Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGDKIAVIPGTFDPITNGHLDIIERAAKIFDVLYVSVLNNSSKKPLFTIEERMEMIRQVTAHLPNVQV-ESASGLTVDYAATRGATAIVRGLRAVSDFEYEMQIASMNRTLNADIETFFVMTNTKYSFLSSSMVKEVAQYQGDISELVPEIVNKAVQAKFK
3ND6 Chain:E ((3-158))
---KIALFPGSFDPMTNGHLNLIERSAKLFDEVIIGVFI------LFTPEEKKYLIEEATKEMPNVRVIMQETQLTVESAKSLGANFLIRGIRNVKDYEYEKDIAKMNQHLAPEIETVFLLAEEPYAHVSSSLLKEVLRFGGDVSDYLPPNIYHALKQK--
General information:
TITO was launched using:
RESULT:
Template:
3ND6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104492 for 1132 contacts (-92.3/contact) +
2D Compatibility (PS) -16060 + (NN) -5236 + (LL) 8
1D Compatibility (HY) -16400 + (ID) 3400
Total energy: -145580.0 ( -128.60 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_3ND6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ND6-query.scw
PDB file :
Tito_Scwrl_3ND6.pdb
: