Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDA-KDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
1DVR Chain:A ((5-213))
IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGFILVGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARITGRLIHPASGRSYHKIFNPPKEDMKDDVTGEALVQISDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQPPATVWADI-------
General information:
TITO was launched using:
RESULT:
Template:
1DVR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54630 for 1542 contacts (-35.4/contact) +
2D Compatibility (PS) -23017 + (NN) -17581 + (LL) 796
1D Compatibility (HY) -16800 + (ID) 4200
Total energy: -115432.0 ( -74.86 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_1DVR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1DVR-query.scw
PDB file :
Tito_Scwrl_1DVR.pdb
: