Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAIT--------TVLAK--KGYADAQAYDQIDGAPEERERGITISTAHVEYQTDSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKCDMVD-DEELLELVEMEIRDLLTEYEFPGDDIPVIKGSALKA-----LQGEADWEAKIDELMEAVDSYIPTPERDTDKPFMMPVEDVFSITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVV-------VTGVEMFRKLLDYAEAGDNIGALLRGVAREDIQRGQVLAK----PGSITPHTNFKAETYVLTKEEGGR--HTPFFNNYRPQFYFRTTDVTGIV------TLPEGTEMVMPGDNIELAVELIAPIAIEDGT------KFSIREGGRTVGAGVVSNISK |
3WY9 Chain:B ((5-426)) | ---------KPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPETIIKKFE-SFKFAWVMDRLK---EERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMPQTKEHAFLARTLGIKHIIVTINKMDMVNYDQKVFEKVKAQVEKLLKTLGY--KDFPVIPTSAWNGDNVVKKSDKMPWYNG-PTLIEALDQ-IPEPEKPIDKPLRIPIQDVYSIKGVGTVPVGRVETGKLKVGDVV----IFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHTDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3WY9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -140429 for 3019 contacts (-46.5/contact) +
2D Compatibility (PS) -40406 + (NN) -15294 + (LL) 920
1D Compatibility (HY) -31200 + (ID) 7850
Total energy: -234259.0 ( -77.59 by residue)
QMean score : 0.390
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