Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKVLFHHLKKYKLQATLSTLFVVVMVISQLWQPKLLQQVLDAIMKDDMDEISSIGALLIGIAAVGLIAGILNTILSAKVAQGVGADIRESSFRKIQTFSFSNIEKLSTGNLVVRQTNDITQVQNLVMLSLQSLTRIPIMFIGAFILAMFTLPELWWVIIVLVVLVVLIVVFTFGSMGKHFAIIQKLIDRVNSIAKENLAGMRVVKSFVQEDNEIGRFTTVSDKLTRHTIIVGTLFSVMIPAFMLVSNLAIVVSIFFVGDMAADNPEVIGAIASFMNYLMQIMMAIIIGGMLMMMASRALISLKRITEVLETEPDITYNENAPEQDLEGTVEFRNVSFKY-DGDDTPALEDISFKASVGEMVGIVGATGSGKSTLAQLIPRLYDPTEGEVIIGGTNLKDINKKTLRSTVSFVLQRAILFSGTIADNLRHG-KKDATAEEMEHASKIAQAKEFIDKQAKLYEAPVSERGNNFSGGQKQRLSITRGVIGSPKVLILDDSTSALDAKSEKLVKEAL--NKELDDTTTFIIAQKISSVIQADKILVLDKGKLVGVGSHKELLKENETYREIYDTQKGKEVTA |
4K8O Chain:A ((12-253)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALAAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYRSM----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K8O.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -107039 for 1895 contacts (-56.5/contact) +
2D Compatibility (PS) -26460 + (NN) -12848 + (LL) 32120
1D Compatibility (HY) -20800 + (ID) 4050
Total energy: -139077.0 ( -73.39 by residue)
QMean score : 0.574
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