Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIGQYDITGKACIMGILNVTPDSFSDGGSYTTIDSALNQVGEMLEQGVAIVDIGGESTRPGAVFVTAEEEIKRVVPMIKAIREVYPDLLLSIDTYKTEVAQAALDAGVHILNDVWSGLYDGKMLSLAAERNVPIILMH-------NQEEAVYQDIKKEVCEFLLERAERALEAGVSKDNIWIDPGFGFAKTEEQNLELLKGLEQVCDLGYPVLFGISRKRTVNYLLGGNREVTERDMGTAALSAWAIAKGCQIVRVHNVEVNKDIVTVISQLV
3TZF Chain:A ((20-272))
-------------VMGILNVTPDSFSDGGCHNNLDQALQHAQRMLSAGATLIDIGGESTRPGAAEVSEQEELDRVVPVVEALAQRF-DVWLSVDTSKAAVITESAHAGAHLINDIRS-LQEPGALEAAAKTGLPVCLMHMQGQPKNMQHSPYYDDLMTDINRFFQHHIERCVAAGIAKNKLLLDPGFGFGKNLAHNYQLLAHLSELHHFELPLLVGMSRKSMVGQLL--NVPPQQRVIGSVACAVIAAMQGAQIIRVHDVKETVEAMCIVEATR
General information:
TITO was launched using:
RESULT:
Template:
3TZF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160879 for 2111 contacts (-76.2/contact) +
2D Compatibility (PS) -27883 + (NN) -18514 + (LL) 132
1D Compatibility (HY) -20400 + (ID) 5100
Total energy: -232644.0 ( -110.21 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3TZF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TZF-query.scw
PDB file :
Tito_Scwrl_3TZF.pdb
: