Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----MSKHQSRCKPDSPKKLMELNMTKKIFLFICATLLVGIALYTPTTSIFNHNNVYAATKKAKIKFNKTQKKIVKKAREYAKSGHMSKDSIIEKLKKDSKKYR-QEDINFVINNLKVDYKKNALISAKIYSKTMNLSKQSIFEQLYSESPDKATHSDKFTKEESQYAIDHLKVDFKENALETAKSYQSSSSLSKEEIYKQLTSTLGDKFTNDEAQYAVDHLK |
| 1JJ2 Chain:V ((1-154)) | MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPE-------------------------------TDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFALLSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEG--------------------------------------GQLG-KHDTEGIDDLLEAMR |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JJ2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 20496 for 1102 contacts (18.6/contact) +
2D Compatibility (PS) -15018 + (NN) 120 + (LL) 5388
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: 7086.0 ( 6.43 by residue)
QMean score : 0.369
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